Products
About the CIP Fellows Program
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Instructional Cluster Intro
Kyle Krick | 2023
This repository is designed to be an interactive introduction to the Instructional Cluster at San Diego State...
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Containerization of QUICK
Kyle Krick | 2024
An open source, GPU enabled, *ab initio* and density functional theory program developed by Götz lab at University of California San Diego and Merz lab at Michigan State University. Features...
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Documentation of Benchmarking of Containerized QUICK
Kyle Krick | 2024
This is a sphinx based documentation for QUICK QM package (https://github.com/merzlab/QUICK) developed by Götz lab at University of California San Diego and Merz lab at Michigan State University.
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Benchmarking of Containerized QUICK
Kyle Krick | 2024
Scripts and results from benchmarking containerized [QUICK](https://github.com/merzlab/QUICK). The goal of this repo is to compare containerized QUICK to a local installation of QUICK on various...
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CSUSB Summer Research Program in AI/ML
Nabeel Alzahrani | 2024
I created the Summer Research Program in AI/ML for undergraduate STEM majors interested in learning more about Artificial Intelligence (AI) and Machine Learning (ML).
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Educational aids or Curricula
Hovakim Grabski | 2024
The GitHub repository "CIP_Nextflow_on_HPC" is a comprehensive guide to leveraging Nextflow for deploying tasks on high-performance computing (HPC) systems, with a specific focus on SLURM-based environments.
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Instructional Intro to NextFlow on HPC
Hovakim Grabski | 2024
This repository is designed to be an interactive introduction on how to use Nextflow on HPC within the CIP. This intro assumes that you are familiar with...
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Software Container for FourCastNet
Henry Li | 2024
Researchers at San Diego State University wanted more computation power to train and run inference on FourCastNet.
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Nextflow Core Quickflow
Hovakim Grabski | 2025
nf-core/quickflow is a bioinformatics/cheminformatics pipeline that automates the generation of synthetic quantum chemistry data for AI/ML training, which is crucial in fields like biophysics...
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Singularity Conversion of NVIDIA Containers for Expanse NAIRR Expansion
Victoria Nguyen | 2025
This project will create Singularity containers for SDSC’s Expanse NAIRR Expansion, using NVIDIA’s published AI and ML Docker containers as a starting point. These Singularity containers are...
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RAG For NAIRR Resources Project
Henry Li | 2025
This is a RAG based chatbot that uses the NAIRR API to collect URLs to generate a database of NAIRR resources for inference.
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Containerizing FourCastNet for Kubernetes Cluster
Henry Li | 2025
This repository contain code and yaml for the Shen Climate Lab for use on the National Research Platform Nautilus hyper-cluster.
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Accessible AI and HPC Education for All
Nabeel Alzahrani | 2025
High-performance computing (HPC) and artificial intelligence (AI) are increasingly critical in research and industry, yet opportunities to learn these skills remain limited for many students and...
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About an AI-assisted mobile solution to reliably diagnose Obstructive Sleep Apnea (OSA)
Dung Vu | 2025
Obstructive sleep apnea (OSA) occurs due to improper functioning of the upper respiratory tract. When the muscles of the hard palate in the back of the throat that supports the soft palate relax...